There once lived a pirate named Gol D. Roger. He obtained wealth, fame, and power to earn the title of Pirate King. When he was captured and about to be executed, he revealed that his treasure called One Piece was hidden somewhere at the Grand Line. This made all people set out to search and uncover the One Piece treasure, but no one ever found the location of Gol D. Roger's treasure, and the Grand Line was too dangerous a place to overcome. Twenty-two years after Gol D. Roger's death, a boy named Monkey D. Luffy decided to become a pirate and search for Gol D. Roger's treasure to become the next Pirate King.

The Evangelion saga from TV is artfully recounted, with some additional scenes, in part one see: "Shin Seiki Evangelion" (1995) Part two starts immediately afterward, where the NERV organization has outlived its usefulness. The shadowy covenant of SEELE launches an all-out commando assault against the ill-defended headquarters. Asuka, semi-comatose, is placed in her EVA for safety, while Misato and company struggle to find Shinji and Rei before they're assasinated by SEELE's forces.